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1

High-density mapping of single-molecule trajectories with photoactivated localization microscopy

Manley, Suliana, Gillette, Jennifer M, Patterson, George H, Shroff, Hari, Hess, Harald F, Betzig, Eric, Lippincott-Schwartz, Jennifer

Journal:

Year:

2008

Language:

english

File:

PDF, 361 KB

english, 2008

2

Faster fluorescence microscopy: advances in high speed biological imaging

Winter, Peter W, Shroff, Hari

Journal:

Current Opinion in Chemical Biology

Year:

2014

Language:

english

File:

PDF, 2.81 MB

english, 2014

3

Watching a roundworm develop with a sheet of light

Kumar, Abhishek, Colón-Ramos, Daniel A., Shroff, Hari

Journal:

Year:

2015

Language:

english

File:

PDF, 449 KB

english, 2015

4

Assessing phototoxicity in live fluorescence imaging

Laissue, P Philippe, Alghamdi, Rana A, Tomancak, Pavel, Reynaud, Emmanuel G, Shroff, Hari

Journal:

Year:

2017

Language:

english

File:

PDF, 842 KB

english, 2017

5

Single-fluorophore orientation determination with multiview polarized illumination: modeling and microscope design

Chandler, Talon, Mehta, Shalin, Shroff, Hari, Oldenbourg, Rudolf, La Rivière, Patrick J.

Journal:

Year:

2017

Language:

english

File:

PDF, 20.06 MB

english, 2017

6

Faster, sharper, and deeper: structured illumination microscopy for biological imaging

Wu, Yicong, Shroff, Hari

Journal:

Year:

2018

Language:

english

File:

PDF, 2.44 MB

english, 2018

7

Measuring Simultaneously Muscle and Brain Calcium Activity in the Fruit Fly

Elliott, Amicia D., Berndt, Adama, Diao, Feici, Scott, Robert, Shroff, Hari, White, Benjamin

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 39 KB

english, 2019

8

Quantitative live cell imaging reveals influenza virus manipulation of Rab11A transport through reduced dynein association

Bhagwat, Amar R., Le Sage, Valerie, Nturibi, Eric, Kulej, Katarzyna, Jones, Jennifer, Guo, Min, Tae Kim, Eui, Garcia, Benjamin A., Weitzman, Matthew D., Shroff, Hari, Lakdawala, Seema S.

Journal:

Nature Communications

Year:

2020

Language:

english

File:

PDF, 3.79 MB

english, 2020

9

Optical trapping and integration of semiconductor nanowire assemblies in water

Pauzauskie, Peter J., Radenovic, Aleksandra, Trepagnier, Eliane, Shroff, Hari, Yang, Peidong, Liphardt, Jan

Journal:

Nature Materials

Year:

2006

Language:

english

File:

PDF, 451 KB

english, 2006

10

Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics

Shroff, Hari, Galbraith, Catherine G, Galbraith, James A, Betzig, Eric

Journal:

Year:

2008

Language:

english

File:

PDF, 813 KB

english, 2008

11

Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes

York, Andrew G, Ghitani, Alireza, Vaziri, Alipasha, Davidson, Michael W, Shroff, Hari

Journal:

Year:

2011

Language:

english

File:

PDF, 2.25 MB

english, 2011

12

Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy

York, Andrew G, Parekh, Sapun H, Nogare, Damian Dalle, Fischer, Robert S, Temprine, Kelsey, Mione, Marina, Chitnis, Ajay B, Combs, Christian A, Shroff, Hari

Journal:

Year:

2012

Language:

english

File:

PDF, 1.52 MB

english, 2012

13

Advances in the speed and resolution of light microscopy

Na Ji, Hari Shroff, Haining Zhong, Eric Betzig

Journal:

Current Opinion in Neurobiology

Year:

2008

Language:

english

File:

PDF, 5.02 MB

english, 2008

14

Microscopy in 3D: a biologist's toolbox

Robert S. Fischer, Yicong Wu, Pakorn Kanchanawong, Hari Shroff, Clare M. Waterman

Journal:

Trends in Cell Biology

Year:

2011

Language:

english

File:

PDF, 871 KB

english, 2011

15

Single-Molecule Discrimination of Discrete Perisynaptic and Distributed Sites of Actin Filament Assembly within Dendritic Spines

Nicholas A. Frost, Hari Shroff, Huihui Kong, Eric Betzig, Thomas A. Blanpied

Journal:

Year:

2010

Language:

english

File:

PDF, 1.94 MB

english, 2010

16

Multilayer Three-dimensional Super-resolution Imaging of Thick Biological Samples

Vaziri, Alipasha, Tang, Jianyong, Shroff, Hari, Shank, Charles

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 113 KB

english, 2009

17

Optical Measurement of Mechanical Forces Inside Short DNA Loops

Shroff, Hari, Sivak, David, Siegel, Jake J., McEvoy, A.L., Siu, Merek, Spakowitz, Andrew, Geissler, Phillip L., Liphardt, Jan

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 341 KB

english, 2008

18

Instant super-resolution imaging in live cells and embryos via analog image processing

York, Andrew G, Chandris, Panagiotis, Nogare, Damian Dalle, Head, Jeffrey, Wawrzusin, Peter, Fischer, Robert S, Chitnis, Ajay, Shroff, Hari

Journal:

Year:

2013

Language:

english

File:

PDF, 1.39 MB

english, 2013

19

Advanced optical imaging techniques for neurodevelopment

Wu, Yicong, Christensen, Ryan, Colón-Ramos, Daniel, Shroff, Hari

Journal:

Current Opinion in Neurobiology

Year:

2013

Language:

english

File:

PDF, 3.61 MB

english, 2013

20

[IEEE 2006 49th IEEE International Midwest Symposium on Circuits and Systems - San Juan, PR (2006.08.6-2006.08.9)] 2006 49th IEEE International Midwest Symposium on Circuits and Systems - Efficient Building Blocks for Reversible Sequential Circuit Design

Hari, Siva Kumar Sastry, Shroff, Shyam, Mahammad, Sk. Noor, Kamakoti, V.

Year:

2006

Language:

english

File:

PDF, 270 KB

english, 2006

21

Self-Organization of the Escherichia Coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy

McEvoy, Ann, Greenfield, Derek, Shroff, Hari, Crooks, Gavin E., Wingreen, Ned S., Betzig, Eric, Liphardt, Jan

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 78 KB

english, 2010

22

3D Palm Shows Distinct Distributions of Z-Disc Proteins with the Z-Discs in Cardiomyocytes

Takagi, Yasuharu, Ushakov, Dmitry, Ma, Xuefei, Temprine, Kelsey, Sellers, James R., Shroff, Hari, Peckham, Michelle

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 42 KB

english, 2013

23

Biocompatible Force Sensor with Optical Readout and Dimensions of 6 nm 3

Shroff, Hari, Reinhard, Björn M., Siu, Merek, Agarwal, Harish, Spakowitz, Andrew, Liphardt, Jan

Journal:

Year:

2005

Language:

english

File:

PDF, 203 KB

english, 2005

24

The phosphorescence microphone: A device for testing oxygen sensors and films

McGraw, Christina M., Shroff , Hari, Khalil, Gamal, Callis, James B.

Journal:

Review of Scientific Instruments

Year:

2003

Language:

english

File:

PDF, 424 KB

english, 2003

25

Richardson-Lucy Deconvolution as a General Tool for Combining Images with Complementary Strengths

Ingaramo, Maria, York, Andrew G., Hoogendoorn, Eelco, Postma, Marten, Shroff, Hari, Patterson, George H.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

26

WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration

Santella, Anthony, Catena, Raúl, Kovacevic, Ismar, Shah, Pavak, Yu, Zidong, Marquina-Solis, Javier, Kumar, Abhishek, Wu, Yicong, Schaff, James, Colón-Ramos, Daniel, Shroff, Hari, Mohler, William A., B

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.59 MB

english, 2015

27

Asymmetric Division and Differential Gene Expression during a Bacterial Developmental Program Requires DivIVA

Eswaramoorthy, Prahathees, Winter, Peter W., Wawrzusin, Peter, York, Andrew G., Shroff, Hari, Ramamurthi, Kumaran S., Søgaard-Andersen, Lotte

Journal:

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

28

Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy

Greenfield, Derek, McEvoy, Ann L., Shroff, Hari, Crooks, Gavin E., Wingreen, Ned S., Betzig, Eric, Liphardt, Jan, Berg, Howard C.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.34 MB

english, 2009

29

Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm

Lakdawala, Seema S., Wu, Yicong, Wawrzusin, Peter, Kabat, Juraj, Broadbent, Andrew J., Lamirande, Elaine W., Fodor, Ervin, Altan-Bonnet, Nihal, Shroff, Hari, Subbarao, Kanta, Heise, Mark T.

Journal:

Year:

2014

Language:

english

File:

PDF, 7.71 MB

english, 2014

30

Construction of an instant structured illumination microscope

Curd, Alistair, Cleasby, Alexa, Makowska, Katzaryna, York, Andrew, Shroff, Hari, Peckham, Michelle

Journal:

Year:

2015

Language:

english

File:

PDF, 2.65 MB

english, 2015

31

A New Simplified 3D Model of Cardiac Pacemaker Cell Based on Superresolution Structured Illumination Microscopy (SIM)

Maltsev, Victor A., Monfredi, Oliver, Shroff, Hari, York, Andrew G., Maltsev, Anna V., Lakatta, Edward G., Stern, Michael D.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

32

Incoherent structured illumination improves optical sectioning and contrast in multiphoton super-resolution microscopy

Winter, Peter W., Chandris, Panagiotis, Fischer, Robert S, Wu, Yicong, Waterman, Clare M, Shroff, Hari

Journal:

Year:

2015

Language:

english

File:

PDF, 3.90 MB

english, 2015

33

Two-photon instant structured illumination microscopy improves the depth penetration of super-resolution imaging in thick scattering samples

Winter, Peter W., York, Andrew G., Nogare, Damian Dalle, Ingaramo, Maria, Christensen, Ryan, Chitnis, Ajay, Patterson, George H., Shroff, Hari

Journal:

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

34

Drosophila germ granules are structured and contain homotypic mRNA clusters

Trcek, Tatjana, Grosch, Markus, York, Andrew, Shroff, Hari, Lionnet, Timothée, Lehmann, Ruth

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.64 MB

english, 2015

35

Imaging Calcium Activity Patterns in the Drosophila Pupal Ecdysis Neural Circuit

Elliott, Amicia D., Diao, Feici, Waller, Brianna F., Wu, Yicong, York, Andrew G., Shroff, Hari, White, Benjamin H.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

36

Imaging Paradigm for Studying Brain-Wide Activity Patterns in a Drosophila Neural Circuit

Elliott, Amicia D., Diao, Feici, Wu, Yicong, Shah, Sarav, Shroff, Hari, White, Benjamin

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 45 KB

english, 2016

37

Cardiac Pacemaker Cell Function at a Super-Resolution Scale of SIM: Distribution of RyRs, Calcium Dynamics, and Numerical Modeling

Maltsev, Victor A., Maltsev, Alexander V., Juhaszova, Magdalena, Sirenko, Syevda, Monfredi, Oliver, Shroff, Hari, York, Andrew, Sollott, Steven J., Lakatta, Edward G., Stern, Michael D.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 52 KB

english, 2016

38

Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM)

Kumar, Abhishek, Christensen, Ryan, Guo, Min, Chandris, Panos, Duncan, William, Wu, Yicong, Santella, Anthony, Moyle, Mark, Winter, Peter W., Colón-Ramos, Daniel, Bao, Zhirong, Shroff, Hari

Journal:

Biological Bulletin

Year:

2016

Language:

english

File:

PDF, 12.41 MB

english, 2016

39

Using Light-Sheet Microscopy to Understand Evoked Motor Sequence Generation

Elliott, Amicia D., Diao, Feici, Shah, Sarav, Yasoshima, Daniel, Wu, Yicong, Shroff, Hari, White, Benjamin

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 44 KB

english, 2017

40

Visualizing Calcium Flux in Freely Moving Nematode Embryos

Ardiel, Evan L., Kumar, Abhishek, Marbach, Joseph, Christensen, Ryan, Gupta, Rishi, Duncan, William, Daniels, Jonathan S., Stuurman, Nico, Colón-Ramos, Daniel, Shroff, Hari

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 2.13 MB

english, 2017

41

mRNA quantification using single-molecule FISH in Drosophila embryos

Trcek, Tatjana, Lionnet, Timothée, Shroff, Hari, Lehmann, Ruth

Journal:

Nature Protocols

Year:

2016

Language:

english

File:

PDF, 5.69 MB

english, 2016

42

Real-time visualization of chromatin modification in isolated nuclei

Sardo, Luca, Lin, Angel, Khakhina, Svetlana, Beckman, Lucas, Ricon, Luis, Elbezanti, Weam, Jaison, Tara, Vishwasrao, Harshad, Shroff, Hari, Janetopoulos, Christopher, Klase, Zachary A.

Journal:

Journal of Cell Science

Year:

2017

Language:

english

File:

PDF, 3.93 MB

english, 2017

43

Intertwining DNA-RNA nanocapsules loaded with tumor neoantigens as synergistic nanovaccines for cancer immunotherapy

Zhu, Guizhi, Mei, Lei, Vishwasrao, Harshad D., Jacobson, Orit, Wang, Zhantong, Liu, Yijing, Yung, Bryant C., Fu, Xiao, Jin, Albert, Niu, Gang, Wang, Qin, Zhang, Fuwu, Shroff, Hari, Chen, Xiaoyuan

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 3.69 MB

english, 2017

44

[IEEE 2008 Conference on Lasers and Electro-Optics (CLEO) - San Jose, CA, USA (2008.05.4-2008.05.9)] 2008 Conference on Lasers and Electro-Optics - Dual-color superresolution imaging using genetically expressed probes

Shroff, Hari, Galbraith, Catherine G., Galbraith, James A., White, Helen, Gillette, Jennifer, Olenych, Scott, Davidson, Michael W., Betzig, Eric

Year:

2008

Language:

english

File:

PDF, 258 KB

english, 2008

45

Correction: Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm

Lakdawala, Seema S., Wu, Yicong, Wawrzusin, Peter, Kabat, Juraj, Broadbent, Andrew J., Lamirande, Elaine W., Fodor, Ervin, Altan-Bonnet, Nihal, Shroff, Hari, Subbarao, Kanta

Journal:

Year:

2016

Language:

english

File:

PDF, 531 KB

english, 2016

46

A Genetically Encoded Biosensor Strategy for Quantifying Non-muscle Myosin II Phosphorylation Dynamics in Living Cells and Organisms

Markwardt, Michele L., Snell, Nicole E., Guo, Min, Wu, Yicong, Christensen, Ryan, Liu, Huafeng, Shroff, Hari, Rizzo, M.A.

Journal:

Year:

2018

Language:

english

File:

PDF, 6.88 MB

english, 2018

47

Biological Imaging at High Spatiotemporal Resolution

Journal:

Microscopy and Microanalysis

Year:

2018

Language:

english

File:

PDF, 71 KB

english, 2018

48

A scheme for 3-dimensional morphological reconstruction and force inference in the early C. elegans embryo

Xu, Muzhi, Wu, Yicong, Shroff, Hari, Wu, Min, Mani, Madhav, Atzberger, Paul J

Journal:

Year:

2018

Language:

english

File:

PDF, 6.30 MB

english, 2018

49

3D Trafficking of Epidermal Growth Factor Receptor in Live Cells

Alfonzo Mendez, Marco A., Viswasrao, Harshad, Shroff, Hari, Taraska, Justin W.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 40 KB

english, 2019

50

Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution

Duncan, Leighton H., Moyle, Mark W., Shao, Lin, Sengupta, Titas, Ikegami, Richard, Kumar, Abhishek, Guo, Min, Christensen, Ryan, Santella, Anthony, Bao, Zhirong, Shroff, Hari, Mohler, William, Colón-R

Journal:

Journal of Visualized Experiments

Year:

2019

Language:

english

File:

PDF, 1.36 MB

english, 2019